allshire lab funding

                     

                  



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No Heterochromatin - Lose Chromosomes

    

Schizosaccharomyces pombe
 (aka fission yeast) cells lacking heterochromatin at centromeres 
have aberrant kinetochores and are defective in segregating chromosomes in mitosis and meiosis


Review - Epigenetic Regulation of Centromere Chromatin: 

Old Dogs, New Tricks?


The histone H3 variant CENP-A is the key determinant of centromere identity and kinetochore assembly. Recent studies have identified many factors that affect CENP-A localization, but their precise roles are unknown. In this collaborative review with Gary Karpen we build on these advances and on new information about the timing of CENP-A assembly during the cell cycle to propose new models for how centromeric chromatin is established and propagated.

See  Allshire and Karpen (2008) Nature Reviews Genetics 9: 923.



Common Ancestry of CENP-A Chaperones Scm3 and HJURP


Analyses with Chris Ponting's lab of Scm3 and HJURP reconcile previous observations by

demonstrating that fungal Scm3 proteins are distant counterparts of human HJURP. Thus,

investigation of Scm3 and associated proteins is likely to be directly relevant to understanding

 the mechanism of HJURP-mediated CENP-A chromatin assembly at human centromeres.

For details see Sanchez-Pulido et al (2009) Cell 137:1173



 


Synthetic Heterochromatin Bypass RNAi and Centromeric Repeats to

Establish Functional Centromeres
 
Artificially tethering the Clr4 H3 lysine 9 methyltransferase to Gal4 binding sites rewires centromeres so that outer repeats, their non-coding RNAs and RNAi rendered redundant in forming functional centromeres.
For details see Kagansky et al (2009) Science 324: 1716-19

Fission Yeast Scm3: A CENP-A Receptor Required for Integrity of Subkinetochore Chromatin

Localisation of S. pombe CENP-ACnp1 at centromere requires functional Scm3Sim1
Scm3 is released from centromeres in early mitosis, reassociating in late anaphase.  
Scm3 binds CENP-A and Mis18 in vitro.
For details see Pidoux, Choi et al (2009) Mol. Cell 33:299-311


Splicing factors facilitate RNAi-directed silencing
Northern analyses reveals that the amount of siRNA derived from centromeric repeat non-coding transcripts is reduced in specific splicing mutants. 
For details see Bayne et al (2008) Science 322:602-606

             




_______________________________________________________________________________
   Interested in joining us?   
Postdoc and Ph.D. student applications always considered
Enquires to: robin.allshire@ed.ac.uk
•  

PhD Studentships - Apply To Start October 2009
You can apply for two types of PhD studentship:

•                   4 Year PhD Programme in Cell Biology
at the
Wellcome Trust Centre for Cell Biology
University of Edinburgh

Application Deadline: mid-Dec 2009 to Start Oct 2010
Details:
http://www.wcb.ed.ac.uk/phd/
______________________________________________________________________
•                           PhD Studentships from:
The Institute of Cell Biology
University of Edinburgh

Application Deadline: ~Jan 2010 to Start Oct 2010
Details: ICB PostGraduate Studies





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Links:
Wellcome Trust
Wellcome Trust Centre for Cell Biology
CSBE Systems Biology
University of Edinburgh
Edinburgh City Life
Edinburgh Area
School of Biological Sciences Edinburgh Unive
Epigenome NoE
pombeDb-WT-SangerInstitute
Broad Institute Schizosaccharomyces Seq
Biobase-Proteome
BioGrid
PombeNet at Forsburg Lab
Synthetic Biology - Drew Endy
Synthetic Biology - Sc2.0
Drew Endy ~ Defines Synthetic Biology